[English] 日本語
EMN search
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 6,555 items for (author: yang & y)

EMDB-36068:
Monkeypox virus DNA replication holoenzyme F8, A22 and E4 in complex with a DNA duplex and dCTP
Method: single particle / : Xu Y, Wu Y, Wu X, Zhang Y, Yang Y, Li D, Yang B, Gao K, Zhang Z, Dong C, Tang X, Dong H

EMDB-36069:
Monkeypox virus DNA replication holoenzyme F8, A22 and E4 in complex with a DNA duplex and cidofovir diphosphate
Method: single particle / : Xu Y, Wu Y, Wu X, Zhang Y, Yang Y, Li D, Yang B, Gao K, Zhang Z, Dong C, Tang X, Dong H

PDB-8j8f:
Monkeypox virus DNA replication holoenzyme F8, A22 and E4 in complex with a DNA duplex and dCTP
Method: single particle / : Xu Y, Wu Y, Wu X, Zhang Y, Yang Y, Li D, Yang B, Gao K, Zhang Z, Dong C

PDB-8j8g:
Monkeypox virus DNA replication holoenzyme F8, A22 and E4 in complex with a DNA duplex and cidofovir diphosphate
Method: single particle / : Xu Y, Wu Y, Wu X, Zhang Y, Yang Y, Li D, Yang B, Gao K, Zhang Z, Dong C

EMDB-36980:
Cryo-EM structure of DSR2-TTP
Method: single particle / : Zhang H, Li Z, Li XZ

EMDB-36982:
Cryo-EM structure of DSR2-DSAD1 state 2
Method: single particle / : Zhang H, Li Z, Li XZ

EMDB-37272:
Cryo-EM structure of DSR2-DSAD1 state 1
Method: single particle / : Zhang H, Li Z, Li XZ

EMDB-37603:
Cryo-EM structure of DSR2-DSAD1
Method: single particle / : Zhang H, Li Z, Li XZ

EMDB-38421:
Cryo-EM structure of tail tube protein
Method: single particle / : Zhang H, Li Z, Li XZ

PDB-8k98:
Cryo-EM structure of DSR2-TTP
Method: single particle / : Zhang H, Li Z, Li XZ

PDB-8k9a:
Cryo-EM structure of DSR2-DSAD1 state 2
Method: single particle / : Zhang H, Li Z, Li XZ

PDB-8w56:
Cryo-EM structure of DSR2-DSAD1 state 1
Method: single particle / : Zhang H, Li Z, Li XZ

PDB-8wkn:
Cryo-EM structure of DSR2-DSAD1
Method: single particle / : Zhang H, Li Z, Li XZ

PDB-8xkn:
Cryo-EM structure of tail tube protein
Method: single particle / : Zhang H, Li Z, Li XZ

EMDB-36061:
Monkeypox virus DNA replication holoenzyme F8, A22 and E4 complex in a DNA binding form
Method: single particle / : Xu Y, Wu Y, Wu X, Zhang Y, Yang Y, Li D, Yang B, Gao K, Zhang Z, Dong C, Tang X, Dong H

PDB-8j86:
Monkeypox virus DNA replication holoenzyme F8, A22 and E4 complex in a DNA binding form
Method: single particle / : Xu Y, Wu Y, Wu X, Zhang Y, Yang Y, Li D, Yang B, Gao K, Zhang Z, Dong C

EMDB-42949:
Microtubule inner proteins in the 48-nm doublet microtubule from the proximal region of Tetrahymena thermophila strain K40R
Method: single particle / : Legal T, Bui KH, Yang SK

EMDB-35042:
Cryo-EM structure of the the 2-oxoglutarate dehydrogenase (E1) with TCAIM complex
Method: single particle / : Yu X, Yang W

PDB-8i0k:
Cryo-electron microscopic structure of the 2-oxoglutarate dehydrogenase(E1) with TCAIM complex
Method: single particle / : Yu X, Yang W, Zhong YH, Ma XM, Gao YZ

EMDB-41314:
Structure of Gabija AB complex
Method: single particle / : Shen ZF, Yang XY, Fu TM

EMDB-41319:
Structure of Gabija AB complex
Method: single particle / : Shen ZF, Yang XY, Fu TM

EMDB-41321:
Structure of Gabija AB complex 1
Method: single particle / : Shen ZF, Yang XY, Fu TM

PDB-8tjy:
Structure of Gabija AB complex
Method: single particle / : Shen ZF, Yang XY, Fu TM

PDB-8tk0:
Structure of Gabija AB complex
Method: single particle / : Shen ZF, Yang XY, Fu TM

PDB-8tk1:
Structure of Gabija AB complex 1
Method: single particle / : Shen ZF, Yang XY, Fu TM

EMDB-42144:
SARS-CoV-2 Nsp15, apo-form
Method: single particle / : Ito F, Yang H, Zhou ZH, Chen XS

EMDB-42145:
SARS-CoV-2 Nsp15 bound to poly(A/U) RNA, consensus form
Method: single particle / : Ito F, Yang H, Zhou ZH, Chen XS

EMDB-42146:
SARS-CoV-2 Nsp15 bound to poly(A/U) RNA, state 1
Method: single particle / : Ito F, Yang H, Zhou ZH, Chen XS

EMDB-42147:
SARS-CoV-2 Nsp15 bound to poly(A/U) RNA, state 2
Method: single particle / : Ito F, Yang H, Zhou ZH, Chen XS

PDB-8ud2:
SARS-CoV-2 Nsp15, apo-form
Method: single particle / : Ito F, Yang H, Zhou ZH, Chen XS

PDB-8ud3:
SARS-CoV-2 Nsp15 bound to poly(A/U) RNA, consensus form
Method: single particle / : Ito F, Yang H, Zhou ZH, Chen XS

PDB-8ud4:
SARS-CoV-2 Nsp15 bound to poly(A/U) RNA, state 1
Method: single particle / : Ito F, Yang H, Zhou ZH, Chen XS

PDB-8ud5:
SARS-CoV-2 Nsp15 bound to poly(A/U) RNA, state 2
Method: single particle / : Ito F, Yang H, Zhou ZH, Chen XS

EMDB-36793:
Human TWIK-related acid-sensitive potassium channel TASK3 at pH 7.4,200 mM KCl
Method: single particle / : Chen S, Lin H

EMDB-36799:
Human TWIK-related acid-sensitive potassium channel TASK3 at pH 6.0, 5 mM KCl and 135 mM NaCl
Method: single particle / : Chen S, Lin H

EMDB-36805:
Human TWIK-related acid-sensitive potassium channel TASK3 at pH 7.4, 5 mM KCl and 135 mM NaCl
Method: single particle / : Chen S, Lin H

EMDB-36806:
Human TWIK-related acid-sensitive potassium channel TASK3 at pH 6.0, 200 mM KCl
Method: single particle / : Chen S, Lin H

PDB-8k1j:
Human TWIK-related acid-sensitive potassium channel TASK3 at pH 7.4,200 mM KCl
Method: single particle / : Chen S, Lin H

PDB-8k1q:
Human TWIK-related acid-sensitive potassium channel TASK3 at pH 6.0, 5 mM KCl and 135 mM NaCl
Method: single particle / : Chen S, Lin H

PDB-8k1v:
Human TWIK-related acid-sensitive potassium channel TASK3 at pH 7.4, 5 mM KCl and 135 mM NaCl
Method: single particle / : Chen S, Lin H

PDB-8k1z:
Human TWIK-related acid-sensitive potassium channel TASK3 at pH 6.0, 200 mM KCl
Method: single particle / : Chen S, Lin H

EMDB-43931:
CryoEM structure of activated CRAF/MEK/14-3-3 complex with NST-628
Method: single particle / : Quade B, Cohen SE, Huang X

EMDB-43932:
Activated CRAF/MEK heterotetramer from focused refinement of CRAF/MEK/14-3-3 complex
Method: single particle / : Quade B, Cohen SE, Huang X

PDB-9axa:
CryoEM structure of activated CRAF/MEK/14-3-3 complex with NST-628
Method: single particle / : Quade B, Cohen SE, Huang X

PDB-9axc:
Activated CRAF/MEK heterotetramer from focused refinement of CRAF/MEK/14-3-3 complex
Method: single particle / : Quade B, Cohen SE, Huang X

EMDB-43705:
HIV-1 wild-type intasome core
Method: single particle / : Li M, Craigie R

EMDB-43756:
HIV-1 P5-IN intasome core
Method: single particle / : Li M, Craigie R

EMDB-43761:
HIV-1 intasome core assembled with wild-type integrase, 1F
Method: single particle / : Li M, Craigie R

PDB-8w09:
HIV-1 wild-type intasome core
Method: single particle / : Li M, Craigie R

PDB-8w2r:
HIV-1 P5-IN intasome core
Method: single particle / : Li M, Craigie R

Pages:

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242)：Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more